DiffBind absence of reads
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kbrnrc • 0
@kbrnrc-12826
Last seen 7.7 years ago

Hi,

bam files for example execution are missing through installation. How can I find these test bams?

Thanks,

Kübra

diffbind reads bamfiles • 1.1k views
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Gord Brown ▴ 670
@gord-brown-5664
Last seen 4.0 years ago
United Kingdom

Hi,  I have a copy here:

http://files.gdbrown.org/diffbind/DiffBind_vignette_data.tar.gz

that has the BAM files, peaks and sample sheet (because I can never remember where Rory keeps them anyway :).

(I assume you're talking about the data referenced in the vignette.)

Hope this helps.  Let me know if you have trouble untarring it (should be enough to type "tar xf DiffBind_vignette_data.tar.gz" once it's downloaded).

Cheers,

 - Gord

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Rory Stark ★ 5.2k
@rory-stark-5741
Last seen 8 weeks ago
Cambridge, UK

The "official" set of sample data can be found at:

http://DiffBind.starkhome.com

This is also documented in the vignette. 

Cheers-

Rory

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