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domenico.somma
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@domenicosomma-12703
Last seen 4.1 years ago
Hi,
these are my samples:
> samples(cuff_data) sample_index sample_name sample_name parameter value 1 1 S80A_0h <NA> <NA> <NA> 2 2 S80A_3h <NA> <NA> <NA> 3 3 wt_0h <NA> <NA> <NA> 4 4 wt_3h <NA> <NA> <NA>
The cummeRbund manual says:
csHeatmap : Creates a ggplot plot object with a geom_tile layer of FPKM values per feature and sample
argument: control_condition: A character argument indicating which condition should be used as the denominator for fold change. (e.g. "Day0", "Control", etc)
But I can't use it
h<-csHeatmap(myGenes, clustering='row',control_condition="S80A_0h") h<-csHeatmap(myGenes, clustering='row',control_condition="wt_0h") h<-csHeatmap(myGenes, clustering='row',control_condition=1) h<-csHeatmap(myGenes, clustering='row',control_condition=3)
Give me always the same heatmap. Could you show me where is the mistake?