Hi all,
I have successfully installed "MotifDb" package,but failed to load it, and got the following error message. After a while searching, It may be caused by some R package that not updated to the newest version. However, I have upgraded all the packages.
Thank you!
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> library(MotifDb)
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, cbind, colnames, do.call,
duplicated, eval, evalq, Filter, Find, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, Map, mapply, match,
mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position,
rank, rbind, Reduce, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:base’:
colMeans, colSums, expand.grid, rowMeans, rowSums
Loading required package: IRanges
Loading required package: Biostrings
Loading required package: XVector
Error : .onLoad failed in loadNamespace() for 'MotifDb', details:
call: c(values, x)
error: could not find symbol "recursive" in environment of the generic function
Error: package or namespace load failed for ‘MotifDb’
> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
[2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
[3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_People's Republic of China.936
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods
[9] base
other attached packages:
[1] rJava_0.9-8 Biostrings_2.42.1 XVector_0.14.0 IRanges_2.8.1
[5] S4Vectors_0.12.1 BiocGenerics_0.20.0 BiocInstaller_1.24.0
loaded via a namespace (and not attached):
[1] GenomicRanges_1.26.3 zlibbioc_1.20.0 GenomicAlignments_1.10.0
[4] BiocParallel_1.8.1 lattice_0.20-34 GenomeInfoDb_1.10.3
[7] tools_3.3.3 SummarizedExperiment_1.4.0 grid_3.3.3
[10] Biobase_2.34.0 Matrix_1.2-8 rtracklayer_1.34.2
[13] bitops_1.0-6 RCurl_1.95-4.8 Rsamtools_1.26.1
[16] XML_3.98-1.5
The following solution come from: C: Error in GRanges: could not find symbol "recursive" in environment of the generi