Dear all,
I am having problems to install mzR package in R under my Ubuntu 16.04LTS distribution.
source("https://bioconductor.org/biocLite.R")
bioClite("mzR")
As you can see below I get several similar errors. I checked the software version of:
GNU Make 4.1
gcc (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609
netCDF 4.4.0
And I also tried to install from git-hub
install.packages("devtools")
library(devtools)
install_github("sneumann/mzR")
but it didn't work. Could someone help me?
With thanks,
Xavier
#./boost/utility/base_from_member.hpp:xxx:xx: warning: variadic templates only available with -std=c++11 or -std=gnu++11
template<typename ...T>
#./boost/thread/detail/invoke.hpp:xxx:xx: warning: variadic templates only available with -std=c++11 or -std=gnu++11
invoke(Ret(*f)(Args... ), BOOST_THREAD_RV_REF(Args) ...args)
#./boost/thread/once.hpp:35:13: note: template argument deduction/substitution failed:
boost/thread/src/pthread/thread.cpp:140:88: note: cannot convert ‘boost::detail::{anonymous}::create_current_thread_tls_key’ (type ‘void()’) to type ‘boost::once_flag&’
boost::call_once(current_thread_tls_init_flag,create_current_thread_tls_key);
#boost/thread/src/pthread/thread.cpp: In function ‘void boost::detail::set_current_thread_data(boost::detail::thread_data_base*)’:
boost/thread/src/pthread/thread.cpp:146:88: error: no matching function for call to ‘call_once(boost::once_flag&, void (&)())’
boost::call_once(current_thread_tls_init_flag,create_current_thread_tls_key);
What's the output of
sessionInfo()?As follow:
> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.2 LTS
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=de_BE.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=de_BE.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=de_BE.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=de_BE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base