Entering edit mode
Iam trying to plot a raw Microarray Data and it is affy using box plot ,
I read the data then plot it using the code bellow:
CuCelfiles<-list.celfiles(full.names=TRUE)
CuCelfiles
data<-read.celfiles(CuCelfiles, pkgname="pd.hugene.1.0.st.v1")
# The box plot dispaly unorganize name of cel file
boxplot(data)
CuNorm<-rma(CuCelfiles)
I would like change the name of cell fise instead of GSE12345 to H1 , i could not do that , i tried to write data to csv but it does not work ? Any help please
@ Rreck I tried
Error in as.data.frame.default(x[[i]], optional = TRUE) :
cannot coerce class "structure("ExpressionFeatureSet", package = "oligoClasses")" to a data.frame
I am not sure if you need a csv. sometimes i use this approach to save, move and load data when I have trouble like you are showing. http://www.fromthebottomoftheheap.net/2012/04/01/saving-and-loading-r-objects/