Hi , I'm a newcomer for R. Recently I wanted to use GO.db in my windows 10 system. But I met a mistake during installation. Here is the mistake.
> biocLite("GO.db") BioC_mirror: https://bioconductor.org Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.2 (2016-10-31). Installing package(s) ‘GO.db’ installing the source package ‘GO.db’ trying URL 'https://bioconductor.org/packages/3.4/data/annotation/src/contrib/GO.db_3.4.0.tar.gz' Content type 'application/x-gzip' length 31897756 bytes (30.4 MB) downloaded 30.4 MB ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db' * removing 'D:/用户目录/我的文档/R/win-library/3.3/GO.db' The downloaded source packages are in ‘C:\Users\Administrator\AppData\Local\Temp\Rtmp4ewGzV\downloaded_packages’ Warning messages: 1: running command '"C:/PROGRA~1/R/R-33~1.2/bin/x64/R" CMD INSTALL -l "D:\用户目录\我的文档\R\win-library\3.3" C:\Users\ADMINI~1\AppData\Local\Temp\Rtmp4ewGzV/downloaded_packages/GO.db_3.4.0.tar.gz' had status 1 2: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘GO.db’ had non-zero exit status
When I use function traceback() to get the error.
> traceback() 2: AnnotationDbi::as.data.frame() 1: AnnotationDbi::as.data.frame()
I have checked the "AnnotationDbi" package. Here is the consequence.
> sessionInfo("AnnotationDbi") R version 3.3.2 (2016-10-31) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) locale: [1] LC_COLLATE=Chinese (Simplified)_China.936 LC_CTYPE=Chinese (Simplified)_China.936 [3] LC_MONETARY=Chinese (Simplified)_China.936 LC_NUMERIC=C [5] LC_TIME=Chinese (Simplified)_China.936 attached base packages: character(0) other attached packages: [1] AnnotationDbi_1.36.2 loaded via a namespace (and not attached): [1] IRanges_2.8.1 BiocInstaller_1.24.0 graphics_3.3.2 DBI_0.5-1 parallel_3.3.2 [6] tools_3.3.2 utils_3.3.2 grDevices_3.3.2 memoise_1.0.0 Rcpp_0.12.9 [11] stats_3.3.2 Biobase_2.34.0 datasets_3.3.2 RSQLite_1.1-2 S4Vectors_0.12.1 [16] methods_3.3.2 digest_0.6.12 BiocGenerics_0.20.0 stats4_3.3.2 base_3.3.2
What's wrong with this package? I have updated all the package, and the R is 3.3.2 version.
Thanks for any help in advance.
thanks for your help!
this is a method I have tried, but the reason is very unexpected. Just because a language problem.
thanks for your help again!