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mo
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@mo-12349
Last seen 7.9 years ago
Dear Members.
When trying to install the R package "flowWorkspace" on my Ubuntu 16.04, I receive the following error:
> biocLite("flowWorkspace") ...
g++ -I/usr/share/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -Iboost_serialization -I"/home/moritz/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include" -I"/home/moritz/R/x86_64-pc-linux-gnu-library/3.2/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c boost_serialization/xml_wgrammar.cpp -o boost_serialization/xml_wgrammar.o In file included from boost_serialization/xml_wgrammar.cpp:146:0: boost_serialization/basic_xml_grammar.ipp:458:6: error: prototype for ‘void boost::archive::basic_xml_grammar<CharType>::windup(boost::archive::basic_xml_grammar<CharType>::IStream&)’ does not match any in class ‘boost::archive::basic_xml_grammar<CharType>’ void basic_xml_grammar<CharType>::windup(IStream & is){ ^ In file included from boost_serialization/xml_wgrammar.cpp:18:0: /home/moritz/R/x86_64-pc-linux-gnu-library/3.2/BH/include/boost/archive/impl/basic_xml_grammar.hpp:166:10: error: candidate is: bool boost::archive::basic_xml_grammar<CharType>::windup(boost::archive::basic_xml_grammar<CharType>::IStream&) bool windup(IStream & is);
/usr/lib/R/etc/Makeconf:143: recipe for target 'boost_serialization/xml_wgrammar.o' failed make: *** [boost_serialization/xml_wgrammar.o] Error 1 ERROR: compilation failed for package ‘flowWorkspace’
...
Any suggestions?
Thanks a lot!
moritz
> sessionInfo() R version 3.2.3 (2015-12-10) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.1 LTS locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=de_DE.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=de_DE.UTF-8 [6] LC_MESSAGES=en_US.UTF-8 LC_PAPER=de_DE.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.20.3 httr_1.2.1 loaded via a namespace (and not attached): [1] magrittr_1.5 R6_2.2.0 tools_3.2.3 curl_2.3 Rcpp_0.12.9 jsonlite_1.2 purrr_0.2.2
Hi Moritz,
I am facing the same problem and I was wondering if you finally succeeded in installing flowWorkspace on ubuntu.
Thanks a lot
Pierre