Is there a way to convert Ensembl gene IDs to corresponding NCBI gene IDs for non-model species? I'm working on the flathead mullet Mugil cephalus, for which a reference genome exists on both NCBI and Ensembl-rapid (gtf/gff3 available on both), but no org.db annotation package or biomaRt is available.
Is there a way to programmatically exploit the gff resource?
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This OrgDb doesn't have Ensembl mappings. If possible, you should just try to stay within one or the other annotation service rather than mapping between.
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This
OrgDb
doesn't have Ensembl mappings. If possible, you should just try to stay within one or the other annotation service rather than mapping between.