input for singR function
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Paria • 0
@8df4a822
Last seen 22 months ago
Canada

Hello everyone, I am trying to run singleR for my Seurat object. However, not sure what the input format should be. I read somewhere that it should be SingleCellExperiment (http://bioconductor.org/books/release/SingleRBook/using-the-classic-mode.html#annotating-the-test-dataset) and somewhere else it says SummarizedExperiment (https://bioconductor.org/packages/devel/bioc/vignettes/SingleR/inst/doc/SingleR.html). Not sure what is the difference. I greatly appreciate any comments! Paria

Seurat_object singe-cell singleR • 730 views
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Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

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