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BiocNeighours has one BiocView that's classification. Is it used by a k-NN classifier in some other package? It seems like it would be much more flexible than Brian Ripley's knn
in class.
BiocNeighours has one BiocView that's classification. Is it used by a k-NN classifier in some other package? It seems like it would be much more flexible than Brian Ripley's knn
in class.
You can easily answer this question yourself.
> library(BiocPkgTools)
Loading required package: htmlwidgets
> depdf <- buildPkgDependencyDataFrame(repo=c("BioCsoft", "CRAN"),
dependencies=c("Depends", "Imports"))
> head(depdf)
Package dependency edgetype
1 a4 a4Base Depends
2 a4 a4Preproc Depends
3 a4 a4Classif Depends
4 a4 a4Core Depends
5 a4 a4Reporting Depends
6 a4Base a4Preproc Depends
> deplst <- split(depdf$Package, depdf$dependency)
> deplst$BiocNeighbors
[1] "batchelor"
[2] "bluster"
[3] "CellMixS"
[4] "concordexR"
[5] "cydar"
[6] "GeDi"
[7] "imcRtools"
[8] "lemur"
[9] "miloR"
[10] "mumosa"
[11] "scater"
[12] "scDblFinder"
[13] "scMerge"
[14] "scrapper"
[15] "SingleR"
[16] "SpatialFeatureExperiment"
[17] "SpotSweeper"
[18] "StabMap"
[19] "UCell"
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