How to rank DEG for GSEA using DEseq2 result ?
1
0
Entering edit mode
picasa1983 • 0
@picasa1983-14806
Last seen 28 days ago
USA

Hi,

I used to work with limma voom, and for GSEA, I ranked my genes based on the t-value.

However, with the DESeq2 result table, I don't have this metric. How can I rank my genes?

Thanks

DESeq2 limma GeneSetEnrichment • 400 views
ADD COMMENT
0
Entering edit mode
ATpoint ★ 4.5k
@atpoint-13662
Last seen 6 hours ago
Germany

Please check "similar posts" on the righthand-side of this post. This has been asked many times before.

ADD COMMENT

Login before adding your answer.

Traffic: 643 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6