ComplexHeatmap - alter legend position
2
0
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Lucy ▴ 60
@lucy-17014
Last seen 10 weeks ago
United Kingdom

Is there an easy way to move the legend to the right using ComplexHeatmap, so that it doesn't overlap with the row names? I have read the documentation, but am struggling to find the appropriate argument. The main heatmap code is below, along with a plot example.

annotation_col <- HeatmapAnnotation(
    Timepoint = metadata$timepoint, 
    col = list(Timepoint = time_cols), 
    show_legend = TRUE, 
    show_annotation_name = FALSE, 
    simple_anno_size = unit(4, "mm"), 
    annotation_name_gp = gpar(fontsize = 11))

my_heatmap <- Heatmap(
    my_matrix, 
    col = colorRampPalette(rev(
        RColorBrewer::brewer.pal(n = 7, name = "RdYlBu")))(100), 
    show_column_names = FALSE, 
    top_annotation = annotation_col, 
    row_names_gp = gpar(fontsize = 10, fontface = 1), 
    column_title_gp = gpar(fontsize = 14), 
    heatmap_legend_param = list(
        title = "Activity", 
        title_gp = gpar(fontsize = 11), 
        labels_gp = gpar(fontsize = 11)),  
    split = 3, 
    row_title = NULL)

ComplexHeatmap example heatmap

ComplexHeatmap • 862 views
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1
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Zuguang Gu ▴ 290
@zuguang-gu-7797
Last seen 5 days ago
Germany / Heidelberg / DKFZ

There is a default "maximal length of row names". You can set the argument row_names_max_width to a larger value:

Heatmap(..., row_names_max_width = unit(10, "cm"))

If you want to set such max width programmatically, you can do

max_width = grobWidth(textGrob(rownames(my_matrix), gpar(fontsize = 10, fontface = 1)))

You can also explicitly convert it to mm or inche since the current max_width object might be large.

max_width = convertWidth(max_width, "mm")

then

Heatmap(..., row_names_max_width = max_width)
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0
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Is it possible to use the 'width' argument and then shift the whole heatmap to the left? Or is the only option to truncate the row names?

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Great, thank you. The row_names_max_width argument seems to have worked!

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@james-w-macdonald-5106
Last seen 10 hours ago
United States

There is an argument to specify which side to put the legend on.

0
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Thank you. It's not the side that I want to change. I want to move the legend further to the right, so that it doesn't overlap with the row names.

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