Hi,

I was following the SGSeq tutorial, but there were some things that I didn't understand properly. I would appreciate further explanation, please.

As following the tutorial document for section 11, I created the SGVariantCounts object.

sgv <- rowRanges(sgvc_pred)
sgvc <- getSGVariantCounts(sgv, sample_info = si)
sgvc


x <- counts(sgvc)

vid <- variantID(sgvc)
> vid
[1] 1 2

vid output is only an integer. Could you explain what these numbers are? as well as for eid?

eid <- eventID(sgvc)
> eid
[1] 1 1

now, which information do I have to extract to use as input for differential splicing analysis using DEXSeq? How do I build my DEXSeqDataSet object for further analysis?

Many thanks in advance!