How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
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BCS12 • 0
@d76fa487
Last seen 8 months ago
United States

hello

I am a beginner who just started using rstudio (I just know how to make a Venn diagram in R).

I tried to create a GO plot using usegalaxy, but they did not provide detailed plots for CC, BP, and MF (probably because my organism is not a widely known organism such as human or mouse).

I have a goseq result file annotated as below.

Is there anyone who can give me some help or comment..?

enter image description here

clusterProfiler ggpubr • 390 views
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@james-w-macdonald-5106
Last seen 20 minutes ago
United States

There's a whole book for clusterProfiler that covers pretty much everything. As a beginner, you will have to become familiar with all types of help available, and this is a good place to start.

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