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I have already converted my gene names to Entrez IDs and used pathview to map appropriate genes to my pathway of interest. How do I figure out which of my genes mapped to a specific node? Please, let me know if I can clarify anything. It's my first time doing pathway analysis, so I would appreciate any help! Thank you!
It is not clear to me what you are asking. Why don't you post the the result (graph) of your analysis, as well as your code, and use these to explain more?