Hello everyone!
I'm trying to process some .idat files through the crlmm package on R Studio. Currently, I'm trying to figure out which cdf I should use. I know the "nopackage" option exists, nonetheless I want to be sure that I cannot use any of the preexisting cdf names before using that one. The product used was Infinium Global Diversity Array-8 (GDA) BeadChip by Illumina. Any help would be greatly appreciated as this is my first time using this package.
As a reminder, these are the valid cdf names under crlmm:
"genomewidesnp6"
"genomewidesnp5"
"human1mv1c"
"human370v1c"
"human650v3a"
"human610quadv1b"
"human660quadv1a"
"human370quadv3c"
"human550v3b"
"human1mduov3b"
"humanomni1quadv1b"
"humanomni25quadv1b"
"humanomni258v1a"
"humanomni258v1p1b"
"humanomni5quadv1b"
"humanomniexpress12v1b"
"humanimmuno12v1b"
"humancytosnp12v2p1h"
"humanexome12v1p2a"
"humanomniexpexome8v1p1b"
"nopackage"
Thank you in advance!
Mayra S. Haedo