Hello Everyone!

I'm trying to run the package Syntenet for analyzing synteny of Tomato genes using a modified ITAG4.0 protein sequences.

when i tried infer_synt(), i got the following error.

synt_tom <- infer_syntenet(tomblast,proc_data$annotation)

Error in blast_list[[1]] : subscript out of bounds

I'm not familiar with the data structures, Please kinldy explain this error and please suggest a fix.

Thank you -sujeevan

Answered here.

Thank you for using syntenet. ;-)

Best,

Fabricio