I am running into issues setting up DNABarcodes. Is this because the function std_random_shuffle() has been deprecated for C++? Should I do something else to avoid installation from source?

> BiocManager::install("DNABarcodes")
'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package =
"BiocManager")' for details.
Replacement repositories:
    CRAN: https://cran.rstudio.com/
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.2 (2023-10-31)
Installing package(s) 'DNABarcodes'
Package which is only available in source form, and may need compilation of C/C++/Fortran:
  'DNABarcodes'
Do you want to attempt to install these from sources? (Yes/no/cancel) Yes
installing the source package 'DNABarcodes'

greedyevolution.cpp:83:10: error: no member named 'random_shuffle' in namespace 'std'
    std::random_shuffle(chromosomes.begin(), chromosomes.end(), randWrapper);
    ~~~~~^
1 error generated.
make: *** [greedyevolution.o] Error 1
ERROR: compilation failed for package 'DNABarcodes'
* removing '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/DNABarcodes'

The downloaded source packages are in
    '/private/var/folders/3z/9hr4vx517kvcr0gnf5kffwzr0000gn/T/RtmpJ6l5Kl/downloaded_packages'
Warning message:
In install.packages(...) :
  installation of package 'DNABarcodes' had non-zero exit status

> sessionInfo()
R version 4.3.2 (2023-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.1.2

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/Los_Angeles
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] BiocManager_1.30.22 compiler_4.3.2      tools_4.3.2

It's apparently been deprecated in C++14 and made defunct in C++17, replaced by std::shuffle. You could presumably download the sources, change the calls to std::random_shuffle and then compile. Or alternatively you could complain to the maintainer, but it's not been building on MacOS since Bioc 3.17, so the package might be orphaned? I don't see any commits to the git log that aren't version bumps, so it looks like the package hasn't been touched in years.

Or maybe you can specify C++14 or C++11 when building the package? That might be the easiest fix.