Dear all,

it turns out I cannot use biomaRt anymore. do you have any clue or know from what it might depend?

ensembl_db <- useEnsemblGenomes(biomart = "plants_mart")

Error in collect(): ! Failed to collect lazy table. Caused by error in db_collect(): ! Arguments in ... must be used. Problematic argument: ..1 = Inf Did you misspell an argument name? Run rlang::last_trace() to see where the error occurred.

I think this is caused by using an older version of BiocFileCache and the latest dbplyr. It's not actually a problem with biomaRt, but rather packages it depends on.

There's more information and some solutions at biomaRt not working - lazy table error