rnaSeqGene workflow not available in Bioconductor 3.18
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Nadine ▴ 60
@963c6cc7
Last seen 12 months ago
United Kingdom

The page I had saved for the rnaseqgene workflow is not working anymore. I realised this is due to the vignette not being available in Bioconductor's latest release (3.18, released 25Oct2023).

Previous release: bioc3.17

Current release: bioc3.18

Installing the package with BiocManager::install("rnaseqGene") also gave an error saying the package could not be found. A colleague tested that for me, as I already had the package installed, so I don't have much more details about that, but I leave this info here as it may be related.

rnaseqGene Bioconductor3.18 DifferentialExpression release • 819 views
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I *think* it is due to a typo in a recent update of the GitHub link but not entirely sure.

The developer will probably have fixed this in no time (https://github.com/thelovelab/rnaseqGene/issues/5).

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The github url has nothing to do with Bioconductor. It would be nice to have this fixed and accurate but not affecting what propagates to Bioconductor users.

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Fixed the url.

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shepherl 4.1k
@lshep
Last seen 1 hour ago
United States

https://bioconductor.org/checkResults/release/workflows-LATEST/rnaseqGene/ The rnaseqGene package is not available because the dependent package ReportingTools is not available. I have reached out to ReportingTools as they fixed there ERROR in devel but not RELEASE_3_18 branch. Once this is resolved it should become available.

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