Hi,

I am analyzing dtu for a complex factorial experiment with three factors where I am particularly interested in interaction effects. I see that using satuRn I could pretty easily set up the contrasts I need. However, I would ideally like to use satuRn from within IsoformSwitchAnalyzeR so I can do some of the downstream analyses offered, but I don't see a way to construct contrasts in the way it can be done in satuRn. Is there a way to do this in IsoformSwitchAnalyzeR, or am I better off doing the analysis using satuRn? Thank you!

Jeremy