BSgenome.Athaliana.TAIR.TAIR10.1
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Bruno • 0
@d209d072
Last seen 15 months ago
France

Dear bioc-devel team,

Do you know when the final version of BSgenome.Athaliana.TAIR.TAIR10.1 will be available ? I tried to install the development version of BiocManager but I would need to update R from 4.2 to 4.3 and many other packages will need to be updated. So far I run into the error below

Code should be placed in three backticks as shown below

>BiocManager::install(version='devel')
Error: Bioconductor version '3.18' requires R version '4.3'; use `BiocManager::install(version = '3.16')` with R
 version 4.2; see https://bioconductor.org/install

Is there any way to install it without updating R to 4.3 ? Thank you very much in advance for your help, B.

arabidopsis.db0 Arabidopsis_thaliana Arabidopsis_thaliana_Data • 1.1k views
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If it is not available you could always create your own with the BSgenomeForge package?

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@james-w-macdonald-5106
Last seen 1 day ago
United States

As Lori already pointed out, you can just make your own using the BSgenomeForge package. In addition, there isn't a version for TAIR10 available, regardless of the version of R/Bioc, so if you want this package you will need to build your own.

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Thank you very much. I will do my best to build my own. Fingers crossed

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