DESeq2 error after installing BiocManager
1
0
Entering edit mode
DrFizz • 0
@f5d223cb
Last seen 16 months ago
United States

I am unable to install DESeq2 package even after installing BiocManager. I have looked for various sources to find a tutorial video to solve this, yet I keep on receiving unable to write error. Can you give me step by step instructions what to do to get DESeq2 on my R studio. I just want to install DESeq2 package.

Code should be placed in three backticks as shown below

> BiocManager::install('DESeq2')
'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cran.rstudio.com/
Bioconductor version 3.17 (BiocManager 1.30.21.1), R 4.3.1 (2023-06-16 ucrt)
Installation paths not writeable, unable to update packages
  path: C:/Program Files/R/R-4.3.1/library
  packages:
    KernSmooth, Matrix, mgcv, spatial
Warning message:
package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'DESeq2'
scRNAseq RStudio DESeq2 • 1.8k views
ADD COMMENT
0
Entering edit mode
ATpoint ★ 4.6k
@atpoint-13662
Last seen 19 hours ago
Germany

Read the warning. The package is already installed. Use library(DESeq2) to load it. If that returns errors then please show them.

ADD COMMENT

Login before adding your answer.

Traffic: 482 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6