Error with IsoformSwitchAnalyzer: analyzePFAM
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Callum • 0
@f03d3649
Last seen 16 months ago
United Kingdom

Hi all, I've just started to set up a workflow in IsoformSwitchAnalyzer, version 2.1.2.

I'm having trouble with the analyzePFAM() function, as it doesn't seem to accept results from pfam_scan.


ARH3SwitchListAnalyzed <- analyzePFAM(
  switchAnalyzeRlist   = aSwitchList,
  pathToPFAMresultFile = "pfam_out.txt",
  showProgress=FALSE
)

Output: Error in h(simpleError(msg, call)) :                                                                                                                                   
  error in evaluating the argument 'x' in selecting a method for function 'unique': error in evaluating the argument 'args' in selecting a method for function 'do.call': error in evaluating the argument 'x' in selecting a method for function 'unique': error in evaluating the argument 'x' in selecting a method for function 'which': undefined columns selected
IsoformSwitchAnalyzeR • 749 views
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It seems that the problem doesn't occur when the input file is significantly shortened to ~20 transcripts! Please help

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Hi Callum, did you find out the resolution for this?

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