Entering edit mode
Hi
I'm having issues getting IsoformSwitchAnalyseR working. When I put library(IsoformSwitchAnalyzeR)
I get the message below which I dont understand. I've restarted, updated everything, removed and reinstalled. Can anyone help ? Thank you.
Error: package or namespace load failed for 'IsoformSwitchAnalyzeR' in get(Info[i, 1], envir = env):
lazy-load database '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/edgeR/R/edgeR.rdb' is corrupt
In addition: Warning message:
In get(Info[i, 1], envir = env) : internal error -3 in R_decompress1
sessionInfo( )
R version 4.3.0 (2023-04-21)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.4
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: Europe/London
tzcode source: internal
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] pfamAnalyzeR_1.0.0 lubridate_1.9.2
[3] forcats_1.0.0 stringr_1.5.0
[5] dplyr_1.1.2 purrr_1.0.1
[7] readr_2.1.4 tidyr_1.3.0
[9] tibble_3.2.1 tidyverse_2.0.0
[11] ggplot2_3.4.2 DEXSeq_1.46.0
[13] RColorBrewer_1.1-3 AnnotationDbi_1.62.1
[15] DESeq2_1.40.1 SummarizedExperiment_1.30.1
[17] GenomicRanges_1.52.0 GenomeInfoDb_1.36.0
[19] IRanges_2.34.0 S4Vectors_0.38.1
[21] MatrixGenerics_1.12.0 matrixStats_0.63.0
[23] Biobase_2.60.0 BiocGenerics_0.46.0
[25] BiocParallel_1.34.1 BiocManager_1.30.20
[27] limma_3.56.1
loaded via a namespace (and not attached):
[1] splines_4.3.0 later_1.3.1
[3] BiocIO_1.10.0 bitops_1.0-7
[5] filelock_1.0.2 XML_3.99-0.14
[7] lifecycle_1.0.3 processx_3.8.1
[9] lattice_0.21-8 ensembldb_2.24.0
[11] magrittr_2.0.3 yaml_2.3.7
[13] remotes_2.4.2 httpuv_1.6.11
[15] sessioninfo_1.2.2 pkgbuild_1.4.0
[17] DBI_1.1.3 pkgload_1.3.2
[19] zlibbioc_1.46.0 AnnotationFilter_1.24.0
[21] RCurl_1.98-1.12 rappdirs_0.3.3
[23] GenomeInfoDbData_1.2.10 genefilter_1.82.1
[25] annotate_1.78.0 codetools_0.2-19
[27] DelayedArray_0.26.2 xml2_1.3.4
[29] tidyselect_1.2.0 futile.logger_1.4.3
[31] BiocFileCache_2.8.0 GenomicAlignments_1.36.0
[33] jsonlite_1.8.4 ellipsis_0.3.2
[35] survival_3.5-5 tools_4.3.0
[37] progress_1.2.2 Rcpp_1.0.10
[39] glue_1.6.2 gridExtra_2.3
[41] usethis_2.1.6 withr_2.5.0
[43] formatR_1.14 fastmap_1.1.1
[45] fansi_1.0.4 callr_3.7.3
[47] digest_0.6.31 timechange_0.2.0
[49] R6_2.5.1 mime_0.12
[51] colorspace_2.1-0 biomaRt_2.56.0
[53] RSQLite_2.3.1 utf8_1.2.3
[55] generics_0.1.3 tximeta_1.18.0
[57] rtracklayer_1.60.0 prettyunits_1.1.1
[59] httr_1.4.6 htmlwidgets_1.6.2
[61] S4Arrays_1.0.1 pkgconfig_2.0.3
[63] gtable_0.3.3 blob_1.2.4
[65] hwriter_1.3.2.1 XVector_0.40.0
[67] htmltools_0.5.5 profvis_0.3.8
[69] geneplotter_1.78.0 ProtGenerics_1.32.0
[71] scales_1.2.1 png_0.1-8
[73] lambda.r_1.2.4 rstudioapi_0.14
[75] tzdb_0.3.0 reshape2_1.4.4
[77] rjson_0.2.21 curl_5.0.0
[79] cachem_1.0.8 BiocVersion_3.17.1
[81] parallel_4.3.0 miniUI_0.1.1.1
[83] restfulr_0.0.15 pillar_1.9.0
[85] grid_4.3.0 vctrs_0.6.2
[87] urlchecker_1.0.1 promises_1.2.0.1
[89] dbplyr_2.3.2 xtable_1.8-4
[91] tximport_1.28.0 VennDiagram_1.7.3
[93] GenomicFeatures_1.52.0 cli_3.6.1
[95] locfit_1.5-9.7 compiler_4.3.0
[97] futile.options_1.0.1 Rsamtools_2.16.0
[99] rlang_1.1.1 crayon_1.5.2
[101] ps_1.7.5 plyr_1.8.8
[103] fs_1.6.2 stringi_1.7.12
[105] munsell_0.5.0 Biostrings_2.68.0
[107] lazyeval_0.2.2 devtools_2.4.5.9000
[109] Matrix_1.5-4 BSgenome_1.68.0
[111] hms_1.1.3 bit64_4.0.5
[113] KEGGREST_1.40.0 statmod_1.5.0
[115] shiny_1.7.4 interactiveDisplayBase_1.38.0
[117] AnnotationHub_3.8.0 memoise_2.0.1
[119] bit_4.0.5