IsoformSwitchAnalyzer
0
0
Entering edit mode
Craig • 0
@9e2249d1
Last seen 19 months ago
United Kingdom

Hi

I'm having issues getting IsoformSwitchAnalyseR working. When I put library(IsoformSwitchAnalyzeR)

I get the message below which I dont understand. I've restarted, updated everything, removed and reinstalled. Can anyone help ? Thank you.

Error: package or namespace load failed for 'IsoformSwitchAnalyzeR' in get(Info[i, 1], envir = env):
 lazy-load database '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/edgeR/R/edgeR.rdb' is corrupt
In addition: Warning message:
In get(Info[i, 1], envir = env) : internal error -3 in R_decompress1



sessionInfo( )
R version 4.3.0 (2023-04-21)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.4

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/London
tzcode source: internal

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] pfamAnalyzeR_1.0.0          lubridate_1.9.2            
 [3] forcats_1.0.0               stringr_1.5.0              
 [5] dplyr_1.1.2                 purrr_1.0.1                
 [7] readr_2.1.4                 tidyr_1.3.0                
 [9] tibble_3.2.1                tidyverse_2.0.0            
[11] ggplot2_3.4.2               DEXSeq_1.46.0              
[13] RColorBrewer_1.1-3          AnnotationDbi_1.62.1       
[15] DESeq2_1.40.1               SummarizedExperiment_1.30.1
[17] GenomicRanges_1.52.0        GenomeInfoDb_1.36.0        
[19] IRanges_2.34.0              S4Vectors_0.38.1           
[21] MatrixGenerics_1.12.0       matrixStats_0.63.0         
[23] Biobase_2.60.0              BiocGenerics_0.46.0        
[25] BiocParallel_1.34.1         BiocManager_1.30.20        
[27] limma_3.56.1               

loaded via a namespace (and not attached):
  [1] splines_4.3.0                 later_1.3.1                  
  [3] BiocIO_1.10.0                 bitops_1.0-7                 
  [5] filelock_1.0.2                XML_3.99-0.14                
  [7] lifecycle_1.0.3               processx_3.8.1               
  [9] lattice_0.21-8                ensembldb_2.24.0             
 [11] magrittr_2.0.3                yaml_2.3.7                   
 [13] remotes_2.4.2                 httpuv_1.6.11                
 [15] sessioninfo_1.2.2             pkgbuild_1.4.0               
 [17] DBI_1.1.3                     pkgload_1.3.2                
 [19] zlibbioc_1.46.0               AnnotationFilter_1.24.0      
 [21] RCurl_1.98-1.12               rappdirs_0.3.3               
 [23] GenomeInfoDbData_1.2.10       genefilter_1.82.1            
 [25] annotate_1.78.0               codetools_0.2-19             
 [27] DelayedArray_0.26.2           xml2_1.3.4                   
 [29] tidyselect_1.2.0              futile.logger_1.4.3          
 [31] BiocFileCache_2.8.0           GenomicAlignments_1.36.0     
 [33] jsonlite_1.8.4                ellipsis_0.3.2               
 [35] survival_3.5-5                tools_4.3.0                  
 [37] progress_1.2.2                Rcpp_1.0.10                  
 [39] glue_1.6.2                    gridExtra_2.3                
 [41] usethis_2.1.6                 withr_2.5.0                  
 [43] formatR_1.14                  fastmap_1.1.1                
 [45] fansi_1.0.4                   callr_3.7.3                  
 [47] digest_0.6.31                 timechange_0.2.0             
 [49] R6_2.5.1                      mime_0.12                    
 [51] colorspace_2.1-0              biomaRt_2.56.0               
 [53] RSQLite_2.3.1                 utf8_1.2.3                   
 [55] generics_0.1.3                tximeta_1.18.0               
 [57] rtracklayer_1.60.0            prettyunits_1.1.1            
 [59] httr_1.4.6                    htmlwidgets_1.6.2            
 [61] S4Arrays_1.0.1                pkgconfig_2.0.3              
 [63] gtable_0.3.3                  blob_1.2.4                   
 [65] hwriter_1.3.2.1               XVector_0.40.0               
 [67] htmltools_0.5.5               profvis_0.3.8                
 [69] geneplotter_1.78.0            ProtGenerics_1.32.0          
 [71] scales_1.2.1                  png_0.1-8                    
 [73] lambda.r_1.2.4                rstudioapi_0.14              
 [75] tzdb_0.3.0                    reshape2_1.4.4               
 [77] rjson_0.2.21                  curl_5.0.0                   
 [79] cachem_1.0.8                  BiocVersion_3.17.1           
 [81] parallel_4.3.0                miniUI_0.1.1.1               
 [83] restfulr_0.0.15               pillar_1.9.0                 
 [85] grid_4.3.0                    vctrs_0.6.2                  
 [87] urlchecker_1.0.1              promises_1.2.0.1             
 [89] dbplyr_2.3.2                  xtable_1.8-4                 
 [91] tximport_1.28.0               VennDiagram_1.7.3            
 [93] GenomicFeatures_1.52.0        cli_3.6.1                    
 [95] locfit_1.5-9.7                compiler_4.3.0               
 [97] futile.options_1.0.1          Rsamtools_2.16.0             
 [99] rlang_1.1.1                   crayon_1.5.2                 
[101] ps_1.7.5                      plyr_1.8.8                   
[103] fs_1.6.2                      stringi_1.7.12               
[105] munsell_0.5.0                 Biostrings_2.68.0            
[107] lazyeval_0.2.2                devtools_2.4.5.9000          
[109] Matrix_1.5-4                  BSgenome_1.68.0              
[111] hms_1.1.3                     bit64_4.0.5                  
[113] KEGGREST_1.40.0               statmod_1.5.0                
[115] shiny_1.7.4                   interactiveDisplayBase_1.38.0
[117] AnnotationHub_3.8.0           memoise_2.0.1                
[119] bit_4.0.5
Isoform IsoformSwitchAnalyzeR • 504 views
ADD COMMENT

Login before adding your answer.

Traffic: 966 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6