Can a expressed gene dataset yielded after CPM be used in DESeq2 and EdgeR?
1
0
Entering edit mode
Sep • 0
@06de5a1f
Last seen 15 months ago
Germany

Hi,

Can a expressed gene dataset yielded after CPM be used in DESeq2 or EdgeR or the data should be completely raw count data?

Thanks a lot for your kind help in advance.

DESeq2 edgeR • 542 views
ADD COMMENT
0
Entering edit mode
Guido Hooiveld ★ 4.1k
@guido-hooiveld-2020
Last seen 11 hours ago
Wageningen University, Wageningen, the …

No, since both methods require the (raw) count data as input!

Also see e.g.: Workaround to using normalized counts as input for edgeR and How to do DEGs based on CPM

ADD COMMENT

Login before adding your answer.

Traffic: 877 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6