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Hi,
Can a expressed gene dataset yielded after CPM be used in DESeq2 or EdgeR or the data should be completely raw count data?
Thanks a lot for your kind help in advance.
Hi,
Can a expressed gene dataset yielded after CPM be used in DESeq2 or EdgeR or the data should be completely raw count data?
Thanks a lot for your kind help in advance.
No, since both methods require the (raw) count data as input!
Also see e.g.: Workaround to using normalized counts as input for edgeR and How to do DEGs based on CPM
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