Hi everyone, I am trying to use "xcms" package (of Bioconductor) in R.4.2.3 for analyzing some metabolism data, but I am getting this error:
library(xcms)
library(mzR)
Warning message: In fun(libname, pkgname) : mzR has been built against a different Rcpp version (1.0.9) than is installed on your system (1.0.10). This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc support forum at https://support.bioconductor.org/. For details see also https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
sessionInfo()
R version 4.2.3 (2023-03-15 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 22000)
Matrix products: default
locale:
[1] LC_COLLATE=Chinese (Simplified)_China.utf8 LC_CTYPE=Chinese (Simplified)_China.utf8
[3] LC_MONETARY=Chinese (Simplified)_China.utf8 LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.utf8
attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] xcms_3.20.0 MSnbase_2.24.2 ProtGenerics_1.30.0 S4Vectors_0.36.2 mzR_2.32.0
[6] Rcpp_1.0.10 Biobase_2.58.0 BiocGenerics_0.44.0 BiocParallel_1.32.6
loaded via a namespace (and not attached):
[1] lattice_0.20-45 digest_0.6.31 foreach_1.5.2
[4] utf8_1.2.3 R6_2.5.1 GenomeInfoDb_1.34.9
[7] plyr_1.8.8 mzID_1.36.0 ggplot2_3.4.1
[10] pillar_1.9.0 zlibbioc_1.44.0 rlang_1.1.0
[13] rstudioapi_0.14 Matrix_1.5-3 preprocessCore_1.60.2
[16] RCurl_1.98-1.12 munsell_0.5.0 DelayedArray_0.24.0
[19] compiler_4.2.3 MsFeatures_1.6.0 pkgconfig_2.0.3
[22] pcaMethods_1.90.0 tidyselect_1.2.0 SummarizedExperiment_1.28.0
[25] tibble_3.2.1 GenomeInfoDbData_1.2.9 RANN_2.6.1
[28] IRanges_2.32.0 codetools_0.2-19 matrixStats_0.63.0
[31] XML_3.99-0.14 fansi_1.0.4 dplyr_1.1.1
[34] MASS_7.3-58.3 bitops_1.0-7 MassSpecWavelet_1.64.1
[37] grid_4.2.3 gtable_0.3.3 lifecycle_1.0.3
[40] affy_1.76.0 DBI_1.1.3 magrittr_2.0.3
[43] MsCoreUtils_1.10.0 scales_1.2.1 ncdf4_1.21
[46] cli_3.6.1 impute_1.72.3 XVector_0.38.0
[49] affyio_1.68.0 doParallel_1.0.17 limma_3.54.2
[52] robustbase_0.95-1 generics_0.1.3 vctrs_0.6.1
[55] RColorBrewer_1.1-3 iterators_1.0.14 tools_4.2.3
[58] glue_1.6.2 DEoptimR_1.0-11 MatrixGenerics_1.10.0
[61] parallel_4.2.3 clue_0.3-64 colorspace_2.1-0
[64] cluster_2.1.4 BiocManager_1.30.20 vsn_3.66.0
[67] GenomicRanges_1.50.2 MALDIquant_1.22.1
Many thanks in advance, Luang
