Hi,

I am trying to run a WGCNA module trait correlation analysis on binary data. Treated versus untreated. I have labeled the trait data as 1 for treated and 2 for untreated. When I run the correlation analysis, I get positive and negative correlation values. So the question is, which of the correlation values represents the treated and which one represents the untreated group?

# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )