Installation of R-packages for RNA-seq analysis
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Begin-R • 0
@63c25e0b
Last seen 19 months ago
Japan

Hi all, I am very new to R and bio conductor. I installed R studio and tried installed an R-package for the my RNA-seq data analysis. I just want to make sure, did I installed a right R-packages for RNA-seq analysis? Please guide me.

The downloaded binary packages are in /var/folders/3l/kvw1_m0s4ygb8_l2f35l3s_00000gn/T//RtmpQnwiqW/downloaded_packages installing the source package ‘GenomeInfoDbData’

trying URL 'https://bioconductor.org/packages/3.16/data/annotation/src/contrib/GenomeInfoDbData_1.2.9.tar.gz'

Content type 'application/x-gzip' length 11725198 bytes (11.2 MB)

downloaded 11.2 MB

  • installing source package ‘GenomeInfoDbData’ ... using staged installation data inst help * installing help indices building package indices testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
  • DONE (GenomeInfoDbData) Code should be placed in three backticks as shown below

# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )
RNASeqData • 987 views
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ATpoint ★ 4.6k
@atpoint-13662
Last seen 12 hours ago
Germany

That's very open-ended. Suggest to follow a guided tutorial, such as https://www.bioconductor.org/packages/release/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html which contains extensive code and background.

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Thank you very much for sharing this link and article to get started from scratch. I will try my best and to go through step by step.

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