Problem with loading rtracklayer
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@7fe98ae2
Last seen 21 months ago
Canada

I have several problems with the rtracklayer package. I actually want to run library(recount), but then I encountered this error:

Error: package or namespace load failed for ‘recount’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Users/janetzhang/Library/R/x86_64/4.2/library/rtracklayer/libs/rtracklayer.so':
  dlopen(/Users/janetzhang/Library/R/x86_64/4.2/library/rtracklayer/libs/rtracklayer.so, 6): Symbol not found: ___darwin_check_fd_set_overflow
  Referenced from: /Users/janetzhang/Library/R/x86_64/4.2/library/rtracklayer/libs/rtracklayer.so
  Expected in: /usr/lib/libSystem.B.dylib
 in /Users/janetzhang/Library/R/x86_64/4.2/library/rtracklayer/libs/rtracklayer.so

I think there is some problem with rtracklayer. I installed the rtracklayer successfully, but then, when I was trying to run library(rtracklayer), I have the same error:

Error: package or namespace load failed for ‘rtracklayer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Users/janetzhang/Library/R/x86_64/4.2/library/rtracklayer/libs/rtracklayer.so':
  dlopen(/Users/janetzhang/Library/R/x86_64/4.2/library/rtracklayer/libs/rtracklayer.so, 6): Symbol not found: ___darwin_check_fd_set_overflow
  Referenced from: /Users/janetzhang/Library/R/x86_64/4.2/library/rtracklayer/libs/rtracklayer.so
  Expected in: /usr/lib/libSystem.B.dylib
 in /Users/janetzhang/Library/R/x86_64/4.2/library/rtracklayer/libs/rtracklayer.so

I have the most updated R studio version and the Bioconductor for my labtop already. I am using macbook. Any suggestion?

rtracklayer • 1.1k views
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