Error with FindConservedMarkers()
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Chris ▴ 20
@3fdb6f97
Last seen 4 months ago
United States

Hi all,

I try to run FindConservedMarkers() but I got this message:


markers_cluster_8 <- FindConservedMarkers(CV.harmony,
                    ident.1 = 8,
                    grouping.var = 'condition')

sessionInfo( )

Warning: Identity: 8 not present in group B. Skipping VVWarning: Identity: 8 not present in group A. Skipping NCError in marker.test[[i]] : subscript out of bounds.

This error appears in many clusters I chose. Would you have a suggestion? Thank you so much!

seurat • 1.2k views
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ATpoint ★ 4.6k
@atpoint-13662
Last seen 46 minutes ago
Germany

Seurat is not a Bioconductor package, please browse their documentation, ask at biostars or open an issue at their GitHub if all that doesn't answer it.

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I asked on Biostars but haven't gotten help to fix this error. Thank you so much!

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