Error with FindConservedMarkers()
1
0
Entering edit mode
Chris ▴ 20
@3fdb6f97
Last seen 4 months ago
United States

Hi all,

I try to run FindConservedMarkers() but I got this message:


markers_cluster_8 <- FindConservedMarkers(CV.harmony,
                    ident.1 = 8,
                    grouping.var = 'condition')

sessionInfo( )

Warning: Identity: 8 not present in group B. Skipping VVWarning: Identity: 8 not present in group A. Skipping NCError in marker.test[[i]] : subscript out of bounds.

This error appears in many clusters I chose. Would you have a suggestion? Thank you so much!

seurat • 1.2k views
ADD COMMENT
1
Entering edit mode
ATpoint ★ 4.6k
@atpoint-13662
Last seen 1 hour ago
Germany

Seurat is not a Bioconductor package, please browse their documentation, ask at biostars or open an issue at their GitHub if all that doesn't answer it.

ADD COMMENT
0
Entering edit mode

I asked on Biostars but haven't gotten help to fix this error. Thank you so much!

ADD REPLY

Login before adding your answer.

Traffic: 538 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6