I cannot install annotables package in Rstudio (macOS)
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m-bihie ▴ 10
@4f002f4c
Last seen 19 months ago
Canada

I cannot install annotables on Rstudio. I have tried updating R to 4.2.2, it did not work on 4.2.1 or the new version. I was able to install BiocManager and several BiocManager packages using BiocManager::install( "function"), but nothing is working for annotables.

Code should be placed in three backticks as shown below

``

BiocManager::install( "annotables" ) 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories: CRAN: https://cran.rstudio.com/

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 (2022-10-31) Installing package(s) 'annotables' Warning message: package ‘annotables’ is not available for Bioconductor version '3.16'

A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

sessionInfo( )

```

DESeq2 PackageTypeData package Annotation • 2.8k views
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Mike Smith ★ 6.6k
@mike-smith
Last seen 10 hours ago
EMBL Heidelberg

Annotables isn't a Bioconductor package, hence why you can't install it using that command. The Github page for annotables suggests:

install.packages("devtools")
devtools::install_github("stephenturner/annotables")
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thanks, this worked!

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