ape::dnds produces nan value
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Working • 0
@22a915df
Last seen 2.0 years ago
Hong Kong

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Code should be placed in three backticks as shown below


CA <- msa(CA,method = "Muscle")
CA <- msa::msaConvert(CA,"ape::DNAbin")
class(CA) <- "matrix"
CA <- as.DNAbin(CA)
a <- dnds(CA)

Warning in log(a) : NaNs produced
Warning in log(a) : NaNs produced
Warning in log(a) : NaNs produced
Warning in log(a) : NaNs produced
Warning in log(a) : NaNs produced
R ape dnds nan nanotubes • 917 views
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You are seeing warnings. example(dnds) also produces NaNs. Warnings can occur when the input data don't conform to expectations of the software. What exactly do you want help with?

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What criteria should the input object meet to keep the software from generating Nans?

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