Entering edit mode
I've successfully run ChipQC on my samples and all plots generated. The report is empty though. A file is created called 'ChiP QC report' except nothing is in it.
My code is:
E2F7 = ChIPQC(E2F_sampleSheet, annotation = "hg19")
ChIPQCreport(E2F7, reportName="ChIP QC report: E2F7 and E2F8", reportFolder="ChIPQCreport")
sessionInfo():
R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22621)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] XLConnect_1.0.6 ChIPseeker_1.32.1 forcats_0.5.2 stringr_1.4.1
[5] dplyr_1.0.10 purrr_0.3.5 readr_2.1.3 tidyr_1.2.1
[9] tibble_3.1.8 tidyverse_1.3.2 ChIPQC_1.32.2 BiocParallel_1.30.4
[13] DiffBind_3.6.5 SummarizedExperiment_1.26.1 Biobase_2.56.0 MatrixGenerics_1.8.1
[17] matrixStats_0.62.0 GenomicRanges_1.48.0 GenomeInfoDb_1.32.4 IRanges_2.30.1
[21] S4Vectors_0.34.0 BiocGenerics_0.42.0 ggplot2_3.4.0
any ideas on why the report is empty?
Thanks in advance.
Hi, I have the same issue. Have you found any solution or any reason why this is happening?