Trouble installing lpsymphony
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Vic • 0
@762ac50f
Last seen 24 months ago
Netherlands

I'm trying to install lpsymphony 1.26 from bioconductor 3.16 in a fresh R 4.2.2 install as part of the MaasLin2 package and encounter the following error: I tried this on CentOS 7 and openSuse 15.4. (I also tried this with lpsymphony 1.24 in bioconductor 3.14 on R 4.2.1 on an older server with also CentOS7, with the same error)

Any clue on how to solve this issue? (old post on the subject, but solution does not work

installing to /usr/local/lib64/R/library/00LOCK-lpsymphony/00new/lpsymphony/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘lpsymphony’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/usr/local/lib64/R/library/00LOCK-lpsymphony/00new/lpsymphony/libs/lpsymphony.so':
  /usr/local/lib64/R/library/00LOCK-lpsymphony/00new/lpsymphony/libs/lpsymphony.so: undefined symbol: _Z20sym_get_col_solutionP15SYM_ENVIRONMENTPd
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/usr/local/lib64/R/library/lpsymphony’
lpsymphony Maaslin2 • 600 views
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