Hi I have a list of differentially expressed genes for E.coli (BL21). Now with this genes I would like to do some downstream analysis. Can you guys help me out with some ideas? I tried to do some functional enrichment analysis but I dont have any ENTREZ id. How can I tackle this problem

Hi acram, Are you using enrichGO? I changed the keyType = "ENTREZID" to keyType = "SYMBOL".

Besides, I am also trying PantherDB (http://pantherdb.org/) to extract more info about the specific genes in each category, GOrilla (http://cbl-gorilla.cs.technion.ac.il/) that allows you to add a background gene list, and discovering Metascape (https://metascape.org) that has interesting readouts. Although not familiar yet with any of them :D.

Good luck! Laia