Hello everyone Im trying to load .gmt file into my project. Unfortunately function system.file() can't find my file. Pathway file has been downloaded from MSigDB - curated gene sets. R version - 4.2.1 Rstudio version - 2022.07.1 Build 554 pathwayPCA version - 1.12.0
I tried adding path to sytem.file() and still no success.
gmt_path <- system.file('extdata', 'c2.all.v2022.1.Hs.entrez.gmt', package = "pathwayPCA" ,mustWork = TRUE)
Hi Mikolaj, I'm the maintainer for pathwayPCA. If you run into bugs, please report them here: https://github.com/gabrielodom/pathwayPCA/issues