Entering edit mode
Hello, everyone. I have got the bed file of peak calling of chip-seq
When I use HOMER for the analysis, the following situation happens.
I search in Google but found nothing like it.Hope to get help here
Here is my code
findMotifsGenome.pl /home/huang/chip/ASpeakcalling/AS_summits.bed hg38 /home/huang/chip/ASpeakcalling/homer_result/ -size 200
and I got : where is the file?
I also tried the code under ./homer/bin/ and also got :where is the file?
Please note that Homer is not a Bioconductor package. For the future, non-Bioc questions were better suited for biostars.org or a bioinformatics-focused Reddit channel.