HOMER error: Where is the file?
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兆豪 • 0
@8f1875ba
Last seen 2.1 years ago
Hong Kong

Hello, everyone. I have got the bed file of peak calling of chip-seq

When I use HOMER for the analysis, the following situation happens.

I search in Google but found nothing like it.Hope to get help here

Here is my code

findMotifsGenome.pl /home/huang/chip/ASpeakcalling/AS_summits.bed hg38 /home/huang/chip/ASpeakcalling/homer_result/ -size 200

and I got : where is the file?

I also tried the code under ./homer/bin/ and also got :where is the file?

enter image description here

HOMER chip-seq • 1.7k views
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兆豪 • 0
@8f1875ba
Last seen 2.1 years ago
Hong Kong

I fixed the problem after reinstalling the HOMER

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Please note that Homer is not a Bioconductor package. For the future, non-Bioc questions were better suited for biostars.org or a bioinformatics-focused Reddit channel.

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