Cannot install package "clusterProfiler" by BiocManager::install()
1
0
Entering edit mode
xqhuqd • 0
@f8b05d59
Last seen 2.1 years ago
United States

Hi All,

I am having troubles installing the "clusterProfiler" package, I get the error:

Any ideas on how to install the package? Thanks for any help.



BiocManager::install("clusterProfiler")
if (!require("BiocManager", quietly = TRUE))
  install.packages("BiocManager")
BiocManager::install("org.Mm.eg.db")




BiocManager::install("clusterProfiler")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23 ucrt)
Warning message:
package(s) not installed when version(s) same as current; use `force = TRUE` to
  re-install: 'clusterProfiler' 
> if (!require("BiocManager", quietly = TRUE))
+   install.packages("BiocManager")
> BiocManager::install("org.Mm.eg.db")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23 ucrt)
Warning message:
package(s) not installed when version(s) same as current; use `force = TRUE` to
  re-install: 'org.Mm.eg.db'
clusterProfiler BiocManager • 3.8k views
ADD COMMENT
0
Entering edit mode
shepherl 4.1k
@lshep
Last seen 8 minutes ago
United States

There is no ERROR here. The message indicates you already have clusterProfiler installed. You should be able to use library(clusterProfiler)

ADD COMMENT

Login before adding your answer.

Traffic: 909 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6