How to subset a list of genes from a curated reference list of genes
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Manav • 0
@6c392f63
Last seen 2.1 years ago
United States

Hello, I have performed a differential gene expression analysis on my bulk transcriptomic dataset which gave me 500-1100 significantly deregulated genes across 4 different comparisons. I have a list of about 75 genes of interest that may or may not be significantly deregulated across different comparisons. I want to make a summary table of their fold change across different comparisons. Can someone please explain how I can do that in R and avoid doing that manually?

Thanks for your time.

Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )
R subset DifferentialExpression • 1.1k views
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It would be clearer if you provide example of your datasets but there are easy way to do it by using subset() and even simply selecting rows by rownames if you have genes in rownnames

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