Question

tximport RSEM error

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ribioinfo ▴ 100

@ribioinfo-9434

Last seen 4.4 years ago

Hi, I would like to import the tables of RSEM, using this command line:

txi.rsem = tximport(l, type = "rsem", reader = read_tsv)

I got this error:

Error in abundanceMat[, i] <- raw[[abundanceCol]] : 
  number of items to replace is not a multiple of replacement length

Could you help me?

Riccardo

tximport • 1.7k views

ADD COMMENT • link updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by ribioinfo ▴ 100

score 0 · Answer 1 · 2017-01-18

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Michael Love 43k

@mikelove

Last seen 1 day ago

United States

What is 'l'? Can you show the top of one of the files:

readLines(l[1], n=10)

ADD COMMENT • link 8.0 years ago Michael Love 43k

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I changed my answer as 'l' is a vector.

ADD REPLY • link 8.0 years ago Michael Love 43k

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Hi, I found the problem there was a table that had a different number of rows. Now everything works.

Thank you.

Riccardo

ADD REPLY • link 8.0 years ago ribioinfo ▴ 100

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Hi Riccardo, How did you solve your problem? I have the same situation with my data in which three of my files have a different number of rows. At this moment, I excluded them just to analyze those which have the same number of rows.

Thanks for your help!

Rodolfo

ADD REPLY • link 5.2 years ago rodolfo.peacewalker • 0