Entering edit mode
It seems only Cell Ranger versions 2 and 3 are supported: version = c("auto", "2", "3")
. How about 7.0.1?
> dir
[1] "DANFRO_CUL1HNM3"
allCounts <- read10xCounts(dir)
.check_for_compressed(barcode.loc, compressed): cannot find 'DANFRO_CUL1HNM3/barcodes.tsv' or its gzip-compressed form
The folder structure looks like
$ ls DANFRO_CUL1HNM3
DANFRO_CUL1HNM3.mri.tgz SC_RNA_COUNTER_CS _cmdline _filelist _finalstate _invocation _jobmode _log _mrosource _perf _sitecheck _tags _timestamp _uuid _vdrkill _versions outs
$ ls DANFRO_CUL1HNM3/outs
analysis filtered_feature_bc_matrix metrics_summary.csv possorted_genome_bam.bam raw_feature_bc_matrix web_summary.html
cloupe.cloupe filtered_feature_bc_matrix.h5 molecule_info.h5 possorted_genome_bam.bam.bai raw_feature_bc_matrix.h5