Issue with installation of a package.
1
0
Entering edit mode
@f66c10f0
Last seen 2.1 years ago
South Africa

Good day

I am struggling to install a package. I have been trying for days. I am not great with programming I am trying to use Phenoflow in R and a required package is flowFDA.

Please see the command and the error below

BiocManager::install("flowFDA")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23 ucrt)
Installing package(s) 'flowFDA'
Old packages: 'foreign', 'nnet'
Update all/some/none? [a/s/n]: 
a
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/foreign_0.8-83.zip'
Content type 'application/zip' length 277838 bytes (271 KB)
downloaded 271 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/nnet_7.3-18.zip'
Content type 'application/zip' length 122410 bytes (119 KB)
downloaded 119 KB

package ‘foreign’ successfully unpacked and MD5 sums checked
package ‘nnet’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Users\Kinosha\AppData\Local\Temp\RtmpuIMGks\downloaded_packages
Warning message:
package ‘flowFDA’ is not available for Bioconductor version '3.15'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

Any help is appreciated.

Thank you in advance

RStudio flowFDA • 976 views
ADD COMMENT
0
Entering edit mode
Basti ▴ 780
@7d45153c
Last seen 10 hours ago
France

flowFDA is not a bioconductor package, please follow Github page guidelines for installation : https://github.com/statOmics/flowFDA Pay attention that it does not seem to be maintained since 2016 and the biocLite command to install dependencies should be replaced by BiocManager::install().

ADD COMMENT

Login before adding your answer.

Traffic: 519 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6