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Im a beginner in R and I want to forge Casuarina equistifolia genome in BSgenome package as it is not available as inbuilt package. After spending so much time in solving errors but still I couldn't solve one error. Kindly help me to solve the below error.
Seed File I have used
Package: BSgenome.Cequisetifolia.NCBI.ASM379533v1
Title: Full genome sequences for Casuarina equisetifolia incana (ASM379533v1)
Description: Full genome sequences for Casuarina equisetifolia incana as provided by NCBI (assembly ASM379533v1, assembly accession GCA_003795335.1) and stored in Biostrings objects
Version: 1.5.0
organism: Casuarina equisetifolia incana
common_name: Pine
genome: ASM379533v1
provider: NCBI
release_date: 2018/11/19
source_url: https://www.ncbi.nlm.nih.gov/assembly/GCA_003795335.1
organism_biocview: Casuarina_equisetifolia_incana
BSgenomeObjname: Cequisetifolia
circ_seqs: character(0)
SrcDataFiles: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/795/335/GCA_003795335.1_ASM379533v1/
PkgExamples: genome[["chr1"]]
seqs_srcdir: C:/Users/manoj/OneDrive/Desktop/genomepackage/seqs_srcdir
seqfile_name: ASM379533v1.2bit
Error Im getting
> forgeBSgenomeDataPkg("BSgenome.Cequisetifolia.NCBI.ASM379533v1-seed")
Creating package in ./BSgenome.Cequisetifolia.NCBI.ASM379533v1
Copying 'C:/Users/manoj/OneDrive/Desktop/genomepackage/seqs_srcdir/ASM379533v1.2bit' to './BSgenome.Cequisetifolia.NCBI.ASM379533v1/inst/extdata/single_sequences.2bit' ... DONE
Warning message:
In readLines(infile, n = 25000L) :
incomplete final line found on 'BSgenome.Cequisetifolia.NCBI.ASM379533v1-seed'
Thanks a lot sir. I knew that you @james-w-macdonald-5106 will be the first person to solve the above post. Even I wanted to mail you personally but couldn't get your mail address.
Thank you once again.