Entering edit mode
Hi everyone,
I am trying to install the two packages GenomicRanges and rtracklayer for a while now and it doesn´t work. I have the most recent version of R 4.2.0 and installing all other packages works. Heres the output, that comesup no matter what I try: Can someone help me?
BiocManager::install()
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories:
CRAN: https://cloud.r-project.org
Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.0 (2022-04-22)
**Installation paths not writeable, unable to update packages**
path: /usr/lib/R/library
packages:
nlme, spatial, survival
I also tried two other codes, but they also didnt work:
remove.packages(c("GenomicRanges", "rtracklayer"), lib = ("/home/xxx/R/x86_64-pc-linux-gnu-library/4.2"))
.libPaths()
biocLite(pkgs = c("rtracklayer", "IRanges", "GenomicRanges", type = "binary"))
> sessionInfo( )
R version 4.2.0 (2022-04-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.4 LTS