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I cannot get DESeq2 to download. I updated to the most recent version of R and get this issue
Error: package or namespace load failed for ‘DESeq2’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ‘RSQLite’
I have tried doing BiocManager::install("RSQLite") but it still doesn't resolve the issue. Any idea how I can fix this?
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DESeq2")
sessionInfo( )
Session info:
R version 4.2.0 (2022-04-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur/Monterey 10.16
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocManager_1.30.17 SummarizedExperiment_1.26.1 Biobase_2.56.0 MatrixGenerics_1.8.0
[5] matrixStats_0.62.0 GenomicRanges_1.48.0 GenomeInfoDb_1.32.1 IRanges_2.30.0
[9] S4Vectors_0.34.0 BiocGenerics_0.42.0 Matrix_1.4-1
loaded via a namespace (and not attached):
[1] Rcpp_1.0.8.3 XVector_0.36.0 zlibbioc_1.42.0 BiocParallel_1.30.0 xtable_1.8-4
[6] lattice_0.20-45 R6_2.5.1 httr_1.4.3 tools_4.2.0 parallel_4.2.0
[11] grid_4.2.0 DBI_1.1.2 GenomeInfoDbData_1.2.8 bitops_1.0-7 RCurl_1.98-1.6
[16] DelayedArray_0.22.0 compiler_4.2.0 XML_3.99-0.9