Meaning of brown-coloured nodes in the graph produced by the ReactomePA viewPathway() function.
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@charlesgwellem-16293
Last seen 2.5 years ago
Germany

Hi. I understand from the legend of the plot below that the colouration of nodes from red through blue reflects fold change. But what does the node coloured in brown represent?

enter image description here

The figure above is derived from the code below


viewPathway("E2F mediated regulation of DNA replication", 
            readable = TRUE, 
            foldChange = geneList)
clusterProfiler ReactomePA • 789 views
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I think this is because MCM8 is absent from the geneList example so there is no FC information

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