how to change the FDR threshold in DESrq2?
1
0
Entering edit mode
devi • 0
@20d1be8a
Last seen 2.6 years ago
Germany

Hello everyone,

How to change the FDR threshold in DESrq2? when we use summary function to find out number of up and down regulated genes, it gives values at default FDR= 0.1

Even though I changed FDR into 0.05, still it shows as 0.1 when use summary function. How could I overcome this issue. Kindly help me in this regard. Thank you in advance.

DESeq2 • 811 views
ADD COMMENT
1
Entering edit mode
@mikelove
Last seen 3 days ago
United States

See ?"summary,DESeqResults-method"

ADD COMMENT
0
Entering edit mode

Thank you

ADD REPLY

Login before adding your answer.

Traffic: 566 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6